Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004152.1 Corchorus capsularis cultivar CVL-1 contig04160, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31


Found at i:763 original size:12 final size:12

Alignment explanation


    Indices: 746--770  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        736 AGGGTTCGTT

                        
        746 CATACTGTAAGA
          1 CATACTGTAAGA

                        
        758 CATACTGTAAGA
          1 CATACTGTAAGA

             
        770 C
          1 C

        771 TTATCTGATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24


Consensus pattern (12 bp):   
CATACTGTAAGA
Done.