Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004153.1 Corchorus capsularis cultivar CVL-1 contig04161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:336 original size:12 final size:12

Alignment explanation


    Indices: 319--343  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        309 AGGGTTCGTT

                        
        319 CATACTGTAAGA
          1 CATACTGTAAGA

                        
        331 CATACTGTAAGA
          1 CATACTGTAAGA

             
        343 C
          1 C

        344 TTATCTGATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24


Consensus pattern (12 bp):   
CATACTGTAAGA
Done.