Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004156.1 Corchorus capsularis cultivar CVL-1 contig04164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:134 original size:33 final size:33

Alignment explanation


    Indices: 97--203  Score: 135
    Period size: 33  Copynumber: 3.2  Consensus size: 33

         87 AGCACTAGCG

                    *            *           
         97 ACCGGCCATGCGACTTGGAGAAGTCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                      *    *       *         
        130 ACCGGCCACGTGACTCGGAGATGCCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                          *    *             
        163 ACCGGCCACGCGACATGGACATGTCCGGCC-AC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                     
        195 AACCGGCCA
          1 -ACCGGCCA

        204 TCGCTAGGCG


Statistics
Matches: 63,  Mismatches: 10, Indels: 2
        0.84            0.13        0.03

Matches are distributed among these distances:
  32    2  0.03
  33   61  0.97

ACGTcount: A:0.23, C:0.38, G:0.29, T:0.09


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC
Done.