Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004164.1 Corchorus capsularis cultivar CVL-1 contig04172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30


Found at i:815 original size:2 final size:2

Alignment explanation


    Indices: 769--800  Score: 57
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        759 ATCTTTGCTA

                                                             
        769 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        801 AACAAATGAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   28  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT
Done.