Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004165.1 Corchorus capsularis cultivar CVL-1 contig04173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.27


Found at i:714 original size:2 final size:2

Alignment explanation


    Indices: 707--740  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        697 TTTCTTCATA

                                                              
        707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        741 CATGCATAAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1565 original size:2 final size:2

Alignment explanation


    Indices: 1558--1592  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       1548 GAATCAGTAC

                                                                
       1558 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1593 TT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.