Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004170.1 Corchorus capsularis cultivar CVL-1 contig04178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14980

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
373--453
31
2.7
30
86
7
94
34
28
3
33
1.75
381--453
37
2.0
37
86
5
103
35
28
2
32
1.72
519--560
19
2.2
19
100
0
84
33
9
19
38
1.84
1456--1494
18
2.3
17
86
8
53
20
41
28
10
1.85
1514--1565
23
2.3
23
83
6
70
44
3
0
51
1.19
1642--2176
267
2.0
267
98
0
1034
29
27
19
23
1.98
4630--4673
3
14.7
3
95
0
52
43
34
22
0
1.54
6663--6693
13
2.4
13
100
0
62
0
12
6
80
0.89
10542--10579
6
6.3
6
100
0
76
50
34
15
0
1.45
12136--12254
34
3.4
34
66
15
98
26
3
29
41
1.72
12128--12271
71
2.0
71
98
0
279
28
3
26
41
1.72
14256--14288
17
1.9
17
88
11
50
36
12
21
30
1.90

Tables:   1

The End!