Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004176.1 Corchorus capsularis cultivar CVL-1 contig04184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19820
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:3026 original size:10 final size:10

Alignment explanation


    Indices: 3011--3035  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       3001 CTTCAACTTG

                      
       3011 TATATATGTA
          1 TATATATGTA

                      
       3021 TATATATGTA
          1 TATATATGTA

                 
       3031 TATAT
          1 TATAT

       3036 GCCATTATAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52


Consensus pattern (10 bp):   
TATATATGTA

Found at i:6517 original size:13 final size:13

Alignment explanation


    Indices: 6499--6529  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       6489 TTCATCATAC

                         
       6499 CCCAATTCCAATT
          1 CCCAATTCCAATT

                      *  
       6512 CCCAATTCCATTT
          1 CCCAATTCCAATT

                 
       6525 CCCAA
          1 CCCAA

       6530 GTTATTATAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.29, C:0.42, G:0.00, T:0.29


Consensus pattern (13 bp):   
CCCAATTCCAATT
Done.