Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004179.1 Corchorus capsularis cultivar CVL-1 contig04187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31


Found at i:676 original size:12 final size:13

Alignment explanation


    Indices: 651--684  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

        641 ATAATTATTG

                         
        651 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                         
        664 TTTGCTTTA-TAA
          1 TTTGCTTTATTAA

             *       
        676 TCTGCTTTA
          1 TTTGCTTTA

        685 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59


Consensus pattern (13 bp):   
TTTGCTTTATTAA
Done.