Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004185.1 Corchorus capsularis cultivar CVL-1 contig04193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42


Found at i:619 original size:14 final size:14

Alignment explanation


    Indices: 600--626  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        590 CGAAGCCAAC

                          
        600 AGAGTACTCATGGG
          1 AGAGTACTCATGGG

                         
        614 AGAGTACTCATGG
          1 AGAGTACTCATGG

        627 AAGGGGATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.15, G:0.33, T:0.22


Consensus pattern (14 bp):   
AGAGTACTCATGGG
Done.