Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004188.1 Corchorus capsularis cultivar CVL-1 contig04196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:109 original size:17 final size:17

Alignment explanation


    Indices: 87--120  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

         77 CCCTGCATCT

                      *      
         87 TCAAATAACTGGATAGA
          1 TCAAATAACTCGATAGA

                             
        104 TCAAATAACTCGATAGA
          1 TCAAATAACTCGATAGA

        121 ATAGATTCGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24


Consensus pattern (17 bp):   
TCAAATAACTCGATAGA

Found at i:1009 original size:12 final size:12

Alignment explanation


    Indices: 992--1016  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        982 GATCAGATAA

                        
        992 GTCTTACAGTAT
          1 GTCTTACAGTAT

                        
       1004 GTCTTACAGTAT
          1 GTCTTACAGTAT

             
       1016 G
          1 G

       1017 AACGAACCCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40


Consensus pattern (12 bp):   
GTCTTACAGTAT
Done.