Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004189.1 Corchorus capsularis cultivar CVL-1 contig04197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1291
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:893 original size:11 final size:12

Alignment explanation


    Indices: 873--905  Score: 50
    Period size: 11  Copynumber: 2.8  Consensus size: 12

        863 CGTTCCCGCC

                        
        873 TTTTTATTTATA
          1 TTTTTATTTATA

                        
        885 TTTTT-TTTATA
          1 TTTTTATTTATA

                      
        896 TTTTCTATTT
          1 TTTT-TATTT

        906 CTTTCTTTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  11   10  0.53
  12    6  0.32
  13    3  0.16

ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79


Consensus pattern (12 bp):   
TTTTTATTTATA
Done.