Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004192.1 Corchorus capsularis cultivar CVL-1 contig04200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34


Found at i:312 original size:15 final size:15

Alignment explanation


    Indices: 288--324  Score: 65
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        278 AAACAACTCT

                 *         
        288 TTTTTTTTAATATCG
          1 TTTTTGTTAATATCG

                           
        303 TTTTTGTTAATATCG
          1 TTTTTGTTAATATCG

                   
        318 TTTTTGT
          1 TTTTTGT

        325 AAATTCGTCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.16, C:0.05, G:0.11, T:0.68


Consensus pattern (15 bp):   
TTTTTGTTAATATCG

Found at i:332 original size:14 final size:15

Alignment explanation


    Indices: 296--332  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        286 CTTTTTTTTT

                          *
        296 AATATCGTTTTTGTT
          1 AATATCGTTTTTGTA

                           
        311 AATATCGTTTTTGTA
          1 AATATCGTTTTTGTA

                    
        326 AAT-TCGT
          1 AATATCGT

        333 CTCTTCCTTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  14    4  0.19
  15   17  0.81

ACGTcount: A:0.24, C:0.08, G:0.14, T:0.54


Consensus pattern (15 bp):   
AATATCGTTTTTGTA
Done.