Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004198.1 Corchorus capsularis cultivar CVL-1 contig04206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1226

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95--160
31
2.1
31
88
8
98
48
6
19
25
1.72
237--339
7
14.6
7
66
13
50
55
1
22
20
1.53
238--332
50
1.9
50
80
8
113
55
2
21
21
1.53
257--384
35
3.6
35
87
4
159
53
2
24
19
1.56
357--569
22
9.5
22
73
13
141
52
5
22
20
1.66
204--389
85
2.2
85
81
5
214
54
2
23
19
1.57
371--467
49
1.9
50
81
8
117
54
4
19
21
1.60
439--539
21
4.7
21
81
3
103
50
6
20
21
1.71
537--674
71
2.0
69
81
4
159
50
7
21
21
1.73
548--676
36
3.6
36
83
7
156
49
7
20
21
1.74
588--740
21
7.9
21
68
21
75
50
8
18
21
1.73
635--668
14
2.3
15
90
5
52
55
8
11
23
1.63
542--732
35
5.2
35
78
9
166
49
7
21
21
1.74
650--740
21
4.3
22
80
2
91
52
6
20
19
1.68
650--752
42
2.5
41
79
4
125
50
6
22
20
1.71
814--860
13
3.5
13
72
16
51
61
0
25
12
1.31
805--867
27
2.3
28
83
5
94
61
0
20
17
1.34

Tables:   1

The End!