Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004199.1 Corchorus capsularis cultivar CVL-1 contig04207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Found at i:562 original size:11 final size:11

Alignment explanation


    Indices: 546--588  Score: 68
    Period size: 11  Copynumber: 3.9  Consensus size: 11

        536 TACACTATAT

                       
        546 CTAATTAATAG
          1 CTAATTAATAG

                      *
        557 CTAATTAATAT
          1 CTAATTAATAG

                       
        568 CTAATTAATAG
          1 CTAATTAATAG

            *         
        579 TTAATTAATA
          1 CTAATTAATA

        589 ATGAATAAAT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  11   29  1.00

ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42


Consensus pattern (11 bp):   
CTAATTAATAG

Found at i:570 original size:22 final size:22

Alignment explanation


    Indices: 542--588  Score: 85
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        532 CCATTACACT

                                  
        542 ATATCTAATTAATAGCTAATTA
          1 ATATCTAATTAATAGCTAATTA

                           *      
        564 ATATCTAATTAATAGTTAATTA
          1 ATATCTAATTAATAGCTAATTA

               
        586 ATA
          1 ATA

        589 ATGAATAAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43


Consensus pattern (22 bp):   
ATATCTAATTAATAGCTAATTA
Done.