Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004219.1 Corchorus capsularis cultivar CVL-1 contig04227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1075
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37


Found at i:331 original size:20 final size:20

Alignment explanation


    Indices: 306--346  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        296 TGTTTTGGTT

                                
        306 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

                                
        326 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

             
        346 T
          1 T

        347 TTGAATTAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37


Consensus pattern (20 bp):   
TAAGTTAAAAGAATGTTTGG
Done.