Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004221.1 Corchorus capsularis cultivar CVL-1 contig04229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 953

Length: 1589
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39


Found at i:99 original size:20 final size:20

Alignment explanation


    Indices: 74--114  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         64 TGTTTTGGTT

                                
         74 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

                                
         94 TAAGTTAAAAGAATGTTTGG
          1 TAAGTTAAAAGAATGTTTGG

             
        114 T
          1 T

        115 TTGAATTAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37


Consensus pattern (20 bp):   
TAAGTTAAAAGAATGTTTGG
Done.