Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004224.1 Corchorus capsularis cultivar CVL-1 contig04232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2007
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:688 original size:40 final size:40

Alignment explanation


    Indices: 644--748  Score: 149
    Period size: 40  Copynumber: 2.6  Consensus size: 40

        634 TATATATATG

                                      **            
        644 ATTTACTGATTACTACTTTTACTTCCTTTCTTAATTATCA
          1 ATTTACTGATTACTACTTTTACTTCCACTCTTAATTATCA

                        *            **              
        684 ATTTACTGATTAAT-CATTTTACTTTGACTCTTAATTATCA
          1 ATTTACTGATTACTAC-TTTTACTTCCACTCTTAATTATCA

                                     
        724 ATTTACTGATTACTACTTTTACTTC
          1 ATTTACTGATTACTACTTTTACTTC

        749 TTTAATCCTT


Statistics
Matches: 56,  Mismatches: 7, Indels: 4
        0.84            0.10        0.06

Matches are distributed among these distances:
  39    1  0.02
  40   54  0.96
  41    1  0.02

ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51


Consensus pattern (40 bp):   
ATTTACTGATTACTACTTTTACTTCCACTCTTAATTATCA
Done.