Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004229.1 Corchorus capsularis cultivar CVL-1 contig04237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 731

Length: 1219
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:1207 original size:93 final size:93

Alignment explanation


    Indices: 1044--1215  Score: 335
    Period size: 93  Copynumber: 1.8  Consensus size: 93

       1034 CTTTGTACTA

                                                                             
       1044 TTTGCATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTT
          1 TTTGCATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTT

            *                           
       1109 GGCTTTCTCTTCATTCAATGAGTTCAGC
         66 AGCTTTCTCTTCATTCAATGAGTTCAGC

                                                                             
       1137 TTTGCATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTT
          1 TTTGCATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTT

                          
       1202 AGCTTTCTCTTCAT
         66 AGCTTTCTCTTCAT

       1216 CCAA


Statistics
Matches: 78,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  93   78  1.00

ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41


Consensus pattern (93 bp):   
TTTGCATTATTGGAGACAATTTCTGCAGAGATTCTTCATGATAACTTTGCAGACCTTCATAATTT
AGCTTTCTCTTCATTCAATGAGTTCAGC
Done.