Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004236.1 Corchorus capsularis cultivar CVL-1 contig04244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1597
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:484 original size:20 final size:20

Alignment explanation


    Indices: 459--522  Score: 62
    Period size: 17  Copynumber: 3.3  Consensus size: 20

        449 TTAAGGTTCA

                             *  
        459 ACATTTAGTTTTTCCTACTG
          1 ACATTTAGTTTTTCCTATTG

                           *    *
        479 ACA-TT--TTTTTCCCATTCA
          1 ACATTTAGTTTTTCCTATT-G

                     *          
        497 ACATTTAGTATTTCCTATTG
          1 ACATTTAGTTTTTCCTATTG

                  
        517 ACATTT
          1 ACATTT

        523 TTGTTTTGGA


Statistics
Matches: 34,  Mismatches: 6, Indels: 8
        0.71            0.12        0.17

Matches are distributed among these distances:
  17    9  0.26
  18    3  0.09
  19    4  0.12
  20    9  0.26
  21    9  0.26

ACGTcount: A:0.23, C:0.20, G:0.06, T:0.50


Consensus pattern (20 bp):   
ACATTTAGTTTTTCCTATTG
Done.