Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004244.1 Corchorus capsularis cultivar CVL-1 contig04252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Found at i:908 original size:27 final size:27

Alignment explanation


    Indices: 870--1044  Score: 269
    Period size: 27  Copynumber: 6.2  Consensus size: 27

        860 TCTGCAAGAA

                                       
        870 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                                       
        897 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                                       
        924 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                            *    *           
        951 CTCCGAATCATAAATGATCCGCTGAAGCTCATC
          1 CTCCGAATCAT---T-CT-C-TTGAAGCTCATC

                                        
        984 CTCCGAATCATTTCTCTTGAAGCTCATC
          1 CTCCGAATCA-TTCTCTTGAAGCTCATC

                                       
       1012 CTCCGAATCATTCTCTTGAAGCTCATC
          1 CTCCGAATCATTCTCTTGAAGCTCATC

                  
       1039 CTCCGA
          1 CTCCGA

       1045 TC


Statistics
Matches: 137,  Mismatches: 4, Indels: 14
        0.88            0.03        0.09

Matches are distributed among these distances:
  27   88  0.64
  28   21  0.15
  29    1  0.01
  30    2  0.01
  31    2  0.01
  32    1  0.01
  33   21  0.15
  34    1  0.01

ACGTcount: A:0.23, C:0.33, G:0.12, T:0.31


Consensus pattern (27 bp):   
CTCCGAATCATTCTCTTGAAGCTCATC
Done.