Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004248.1 Corchorus capsularis cultivar CVL-1 contig04256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36


Found at i:354 original size:23 final size:24

Alignment explanation


    Indices: 328--382  Score: 60
    Period size: 23  Copynumber: 2.4  Consensus size: 24

        318 AATTAAATTC

                 *      *           
        328 GAAATTAGAAGACAA-GAACAATA
          1 GAAATAAGAAGAAAAGGAACAATA

                   *                
        351 GAAATAATAAGAAAAGGAACAATA
          1 GAAATAAGAAGAAAAGGAACAATA

               *     
        375 -AAGTAAGA
          1 GAAATAAGA

        383 TAATAAAGAA


Statistics
Matches: 26,  Mismatches: 5, Indels: 2
        0.79            0.15        0.06

Matches are distributed among these distances:
  23   18  0.69
  24    8  0.31

ACGTcount: A:0.64, C:0.05, G:0.18, T:0.13


Consensus pattern (24 bp):   
GAAATAAGAAGAAAAGGAACAATA
Done.