Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000426.1 Corchorus capsularis cultivar CVL-1 contig00426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1782
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29


Found at i:1158 original size:27 final size:27

Alignment explanation


    Indices: 1117--1218  Score: 161
    Period size: 27  Copynumber: 3.8  Consensus size: 27

       1107 CGACCCGAGG

                      *            *    
       1117 CGAAGTGGGAAGATCCACTAG-TAGGGT
          1 CGAAGTGGGAGGATCCACT-GCTGGGGT

                                *      
       1144 CGAAGTGGGAGGATCCACTGTTGGGGT
          1 CGAAGTGGGAGGATCCACTGCTGGGGT

                                       
       1171 CGAAGTGGGAGGATCCACTGCTGGGGT
          1 CGAAGTGGGAGGATCCACTGCTGGGGT

                                 
       1198 CGAAGTGGGAGGATCCACTGC
          1 CGAAGTGGGAGGATCCACTGC

       1219 GGCAACAGTC


Statistics
Matches: 71,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  26    1  0.01
  27   70  0.99

ACGTcount: A:0.23, C:0.18, G:0.41, T:0.19


Consensus pattern (27 bp):   
CGAAGTGGGAGGATCCACTGCTGGGGT
Done.