Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004260.1 Corchorus capsularis cultivar CVL-1 contig04268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40


Found at i:315 original size:19 final size:19

Alignment explanation


    Indices: 291--328  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        281 ATCAAGTCCC

                               
        291 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

                               
        310 TTTTTTATGTTGTGATGGA
          1 TTTTTTATGTTGTGATGGA

        329 ATTCTTTGTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58


Consensus pattern (19 bp):   
TTTTTTATGTTGTGATGGA
Done.