Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004266.1 Corchorus capsularis cultivar CVL-1 contig04274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:103 original size:12 final size:13

Alignment explanation


    Indices: 86--114  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

         76 AGGATCCTTT

                         
         86 AATTCCAATTAA-
          1 AATTCCAATTAAG

                         
         98 AATTCCAATTAAG
          1 AATTCCAATTAAG

                
        111 AATT
          1 AATT

        115 TATTGGGTCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34


Consensus pattern (13 bp):   
AATTCCAATTAAG
Done.