Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000427.1 Corchorus capsularis cultivar CVL-1 contig00427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1246
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33


Found at i:449 original size:27 final size:27

Alignment explanation


    Indices: 411--539  Score: 258
    Period size: 27  Copynumber: 4.8  Consensus size: 27

        401 GACTGTTGTC

                                       
        411 GCAGTGGATCCTCCCACTTCGACCCCA
          1 GCAGTGGATCCTCCCACTTCGACCCCA

                                       
        438 GCAGTGGATCCTCCCACTTCGACCCCA
          1 GCAGTGGATCCTCCCACTTCGACCCCA

                                       
        465 GCAGTGGATCCTCCCACTTCGACCCCA
          1 GCAGTGGATCCTCCCACTTCGACCCCA

                                       
        492 GCAGTGGATCCTCCCACTTCGACCCCA
          1 GCAGTGGATCCTCCCACTTCGACCCCA

                                 
        519 GCAGTGGATCCTCCCACTTCG
          1 GCAGTGGATCCTCCCACTTCG

        540 CCTCGTGTCG


Statistics
Matches: 102,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27  102  1.00

ACGTcount: A:0.18, C:0.43, G:0.19, T:0.19


Consensus pattern (27 bp):   
GCAGTGGATCCTCCCACTTCGACCCCA

Done.