Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004275.1 Corchorus capsularis cultivar CVL-1 contig04283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:29 original size:14 final size:14

Alignment explanation


    Indices: 10--48  Score: 78
    Period size: 14  Copynumber: 2.8  Consensus size: 14

          1 GTTTTACAT

                          
         10 TAATTATAATTAAA
          1 TAATTATAATTAAA

                          
         24 TAATTATAATTAAA
          1 TAATTATAATTAAA

                       
         38 TAATTATAATT
          1 TAATTATAATT

         49 TTATTTATAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   25  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (14 bp):   
TAATTATAATTAAA

Found at i:73 original size:19 final size:20

Alignment explanation


    Indices: 46--84  Score: 62
    Period size: 19  Copynumber: 2.0  Consensus size: 20

         36 AATAATTATA

                *               
         46 ATTTTATTTATAATT-TTCT
          1 ATTTAATTTATAATTGTTCT

                                
         65 ATTTAATTTATAATTGTTCT
          1 ATTTAATTTATAATTGTTCT

         85 TGAAGTTGAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   14  0.78
  20    4  0.22

ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64


Consensus pattern (20 bp):   
ATTTAATTTATAATTGTTCT
Done.