Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004291.1 Corchorus capsularis cultivar CVL-1 contig04299, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:550 original size:20 final size:20

Alignment explanation


    Indices: 525--565  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        515 AAAAAGCCCT

                                
        525 TTTGCTATCTATTTATTTTA
          1 TTTGCTATCTATTTATTTTA

                                
        545 TTTGCTATCTATTTATTTTA
          1 TTTGCTATCTATTTATTTTA

             
        565 T
          1 T

        566 CCGACCTTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.20, C:0.10, G:0.05, T:0.66


Consensus pattern (20 bp):   
TTTGCTATCTATTTATTTTA
Done.