Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004292.1 Corchorus capsularis cultivar CVL-1 contig04300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7369
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:767 original size:14 final size:15

Alignment explanation


    Indices: 748--777  Score: 53
    Period size: 14  Copynumber: 2.1  Consensus size: 15

        738 TAAATTATAT

                           
        748 ATATTTTTTAA-AAA
          1 ATATTTTTTAATAAA

                           
        762 ATATTTTTTAATAAA
          1 ATATTTTTTAATAAA

             
        777 A
          1 A

        778 AAATATGACG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14   11  0.73
  15    4  0.27

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (15 bp):   
ATATTTTTTAATAAA

Found at i:4557 original size:21 final size:21

Alignment explanation


    Indices: 4532--4574  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4522 ATAGTCGGAT

                                 
       4532 GGAACAATTAAAGAAATTAAA
          1 GGAACAATTAAAGAAATTAAA

                                 
       4553 GGAACAATTAAAGAAATTAAA
          1 GGAACAATTAAAGAAATTAAA

             
       4574 G
          1 G

       4575 TCATCAAATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.60, C:0.05, G:0.16, T:0.19


Consensus pattern (21 bp):   
GGAACAATTAAAGAAATTAAA
Done.