Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000430.1 Corchorus capsularis cultivar CVL-1 contig00430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37


Found at i:239 original size:6 final size:6

Alignment explanation


    Indices: 230--254  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        220 TTCCTGTCAG

                                         
        230 TCAGAC TCAGAC TCAGAC TCAGAC T
          1 TCAGAC TCAGAC TCAGAC TCAGAC T

        255 GTTTGTGTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20


Consensus pattern (6 bp):   
TCAGAC

Done.