Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004302.1 Corchorus capsularis cultivar CVL-1 contig04310, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:397 original size:23 final size:24

Alignment explanation


    Indices: 352--398  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 24

        342 TATCTTACTT

                       *      *     
        352 TATTGTTCCTTTTCTTATTATTTC
          1 TATTGTTCCTTGTCTTATAATTTC

                            *       
        376 TATTGTT-CTTGTCTTCTAATTTC
          1 TATTGTTCCTTGTCTTATAATTTC

        399 GAATTTAATT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  23   13  0.65
  24    7  0.35

ACGTcount: A:0.13, C:0.17, G:0.06, T:0.64


Consensus pattern (24 bp):   
TATTGTTCCTTGTCTTATAATTTC
Done.