Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004307.1 Corchorus capsularis cultivar CVL-1 contig04315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29


Found at i:667 original size:21 final size:21

Alignment explanation


    Indices: 641--682  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        631 TCGCTTCCCA

                                 
        641 ATGGTATACTCCAGATTCATT
          1 ATGGTATACTCCAGATTCATT

                                 
        662 ATGGTATACTCCAGATTCATT
          1 ATGGTATACTCCAGATTCATT

        683 TAGATATCGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38


Consensus pattern (21 bp):   
ATGGTATACTCCAGATTCATT
Done.