Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004317.1 Corchorus capsularis cultivar CVL-1 contig04325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1138
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27


Found at i:47 original size:9 final size:9

Alignment explanation


    Indices: 33--76  Score: 70
    Period size: 9  Copynumber: 4.9  Consensus size: 9

         23 TTATACTAAA

                     
         33 ACCGATGAT
          1 ACCGATGAT

                    *
         42 ACCGATGAG
          1 ACCGATGAT

                     
         51 ACCGATGAT
          1 ACCGATGAT

                     
         60 ACCGATGAT
          1 ACCGATGAT

               *    
         69 ACCAATGA
          1 ACCGATGA

         77 GCCTAAGGAC


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18


Consensus pattern (9 bp):   
ACCGATGAT

Found at i:771 original size:18 final size:18

Alignment explanation


    Indices: 750--785  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        740 GATTTAAACT

                              
        750 ACAATCCTCTGATAAAGA
          1 ACAATCCTCTGATAAAGA

                              
        768 ACAATCCTCTGATAAAGA
          1 ACAATCCTCTGATAAAGA

        786 TCCAACGAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22


Consensus pattern (18 bp):   
ACAATCCTCTGATAAAGA
Done.