Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004318.1 Corchorus capsularis cultivar CVL-1 contig04326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9393
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32


Found at i:7945 original size:25 final size:25

Alignment explanation


    Indices: 7917--7966  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       7907 ATTTTTTCAA

                                     
       7917 CAATATATAATAGTATTATATTAAC
          1 CAATATATAATAGTATTATATTAAC

                       *             
       7942 CAATATATAATGGTATTATATTAAC
          1 CAATATATAATAGTATTATATTAAC

       7967 GGGCAACGAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40


Consensus pattern (25 bp):   
CAATATATAATAGTATTATATTAAC

Found at i:8761 original size:33 final size:32

Alignment explanation


    Indices: 8719--8788  Score: 97
    Period size: 33  Copynumber: 2.1  Consensus size: 32

       8709 TAATAGGATG

                        *                     
       8719 ACATCAGTAATAGC-CTTTTTTTTTTGGGCCAAA
          1 ACATCAGTAATAACTCTTTTTTTTTT--GCCAAA

                                             
       8752 ACATCAGTAATAACTTCTTTTTTTTTTGCCAAA
          1 ACATCAGTAATAAC-TCTTTTTTTTTTGCCAAA

                
       8785 ACAT
          1 ACAT

       8789 TAGGGAGCTT


Statistics
Matches: 34,  Mismatches: 1, Indels: 4
        0.87            0.03        0.10

Matches are distributed among these distances:
  33   23  0.68
  35   11  0.32

ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41


Consensus pattern (32 bp):   
ACATCAGTAATAACTCTTTTTTTTTTGCCAAA
Done.