Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004322.1 Corchorus capsularis cultivar CVL-1 contig04330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:56 original size:18 final size:18

Alignment explanation


    Indices: 35--71  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         25 AAAATCGAAT

                         *    
         35 ATCATCATCATCAGTAAG
          1 ATCATCATCATCAATAAG

                              
         53 ATCATCATCATCAATAAG
          1 ATCATCATCATCAATAAG

             
         71 A
          1 A

         72 AAATGTTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27


Consensus pattern (18 bp):   
ATCATCATCATCAATAAG
Done.