Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004323.1 Corchorus capsularis cultivar CVL-1 contig04331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:188 original size:19 final size:19

Alignment explanation


    Indices: 164--201  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        154 ATCTTGGATC

                  *            
        164 TATGTTCTGTTGAATTACT
          1 TATGTTATGTTGAATTACT

                               
        183 TATGTTATGTTGAATTACT
          1 TATGTTATGTTGAATTACT

        202 AAGGTACATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.24, C:0.08, G:0.16, T:0.53


Consensus pattern (19 bp):   
TATGTTATGTTGAATTACT

Found at i:678 original size:21 final size:21

Alignment explanation


    Indices: 648--689  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        638 AATTAACTCT

                 *               
        648 AATATTATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

                                 
        669 AATATAATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

        690 TTATCATTCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36


Consensus pattern (21 bp):   
AATATAATCTAATATAATAAG
Done.