Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000433.1 Corchorus capsularis cultivar CVL-1 contig00433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3755
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:797 original size:31 final size:31

Alignment explanation


    Indices: 762--824  Score: 99
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        752 AAACTAACTC

                                           
        762 AAACATCCAAGATCTAAAGATCTAAAGACTG
          1 AAACATCCAAGATCTAAAGATCTAAAGACTG

                              *    **      
        793 AAACATCCAAGATCTAAATATCTGGAGACTG
          1 AAACATCCAAGATCTAAAGATCTAAAGACTG

             
        824 A
          1 A

        825 TAACCCGAAC


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21


Consensus pattern (31 bp):   
AAACATCCAAGATCTAAAGATCTAAAGACTG
Done.