Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004351.1 Corchorus capsularis cultivar CVL-1 contig04359, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31


Found at i:151 original size:17 final size:19

Alignment explanation


    Indices: 110--148  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        100 TGGGAATGCG

                               
        110 ATAAAAGTAATTCGAATAT
          1 ATAAAAGTAATTCGAATAT

                               
        129 ATAAAAGTAATTCGAATAT
          1 ATAAAAGTAATTCGAATAT

             
        148 A
          1 A

        149 AAATAAATAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31


Consensus pattern (19 bp):   
ATAAAAGTAATTCGAATAT
Done.