Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004355.1 Corchorus capsularis cultivar CVL-1 contig04363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8884
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:8707 original size:21 final size:21

Alignment explanation


    Indices: 8681--8725  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       8671 TTTTTCTTGA

                          *      
       8681 TTGCTAAACACCGCTCCATTT
          1 TTGCTAAACACCGCCCCATTT

                  **   *         
       8702 TTGCTATTCACTGCCCCATTT
          1 TTGCTAAACACCGCCCCATTT

               
       8723 TTG
          1 TTG

       8726 ACGTTTTTTT


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.18, C:0.31, G:0.11, T:0.40


Consensus pattern (21 bp):   
TTGCTAAACACCGCCCCATTT
Done.