Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004367.1 Corchorus capsularis cultivar CVL-1 contig04375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32


Found at i:968 original size:20 final size:20

Alignment explanation


    Indices: 943--983  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        933 TTTAATTCAA

                                
        943 ACCAAACATTCTTTTAACTT
          1 ACCAAACATTCTTTTAACTT

                                
        963 ACCAAACATTCTTTTAACTT
          1 ACCAAACATTCTTTTAACTT

             
        983 A
          1 A

        984 AACCAAAACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.37, C:0.24, G:0.00, T:0.39


Consensus pattern (20 bp):   
ACCAAACATTCTTTTAACTT
Done.