Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000437.1 Corchorus capsularis cultivar CVL-1 contig00437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2270
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29


Found at i:353 original size:20 final size:20

Alignment explanation


    Indices: 326--373  Score: 80
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        316 CAAAGCTACT

                                
        326 ACCC-AAAGCCCAAGTTTAA
          1 ACCCAAAAGCCCAAGTTTAA

                                
        345 ACCCAAAAGCCCAAGTTTAA
          1 ACCCAAAAGCCCAAGTTTAA

                     
        365 AGCCCAAAA
          1 A-CCCAAAA

        374 TGATGTCAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  19    4  0.15
  20   16  0.59
  21    7  0.26

ACGTcount: A:0.46, C:0.31, G:0.10, T:0.12


Consensus pattern (20 bp):   
ACCCAAAAGCCCAAGTTTAA

Found at i:1834 original size:15 final size:16

Alignment explanation


    Indices: 1802--1835  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1792 AAAGAAGAAT

                 *          
       1802 TAAAATTAAATCTAAC
          1 TAAAAGTAAATCTAAC

                            
       1818 TAAAAGTAAAT-TAAC
          1 TAAAAGTAAATCTAAC

               
       1833 TAA
          1 TAA

       1836 GAAAGCAATC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29


Consensus pattern (16 bp):   
TAAAAGTAAATCTAAC
Done.