Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004391.1 Corchorus capsularis cultivar CVL-1 contig04399, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31


Found at i:393 original size:13 final size:13

Alignment explanation


    Indices: 375--400  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        365 CTTTCACAAA

                         
        375 ATTATCAACTAAT
          1 ATTATCAACTAAT

                         
        388 ATTATCAACTAAT
          1 ATTATCAACTAAT

        401 CATAATGGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38


Consensus pattern (13 bp):   
ATTATCAACTAAT

Found at i:669 original size:23 final size:23

Alignment explanation


    Indices: 608--679  Score: 80
    Period size: 23  Copynumber: 3.2  Consensus size: 23

        598 ATTCGAAATA

                          *     *   
        608 TATAAATAATTAGAAATATAGAA-
          1 TATAAATAATTA-ATATATATAAT

                                   
        631 T-T-AATAATTAATATATATAAT
          1 TATAAATAATTAATATATATAAT

                                    
        652 TATAAATAGATTAA-ATATATAAT
          1 TATAAATA-ATTAATATATATAAT

                 
        675 TATAA
          1 TATAA

        680 TATTAAACAG


Statistics
Matches: 43,  Mismatches: 2, Indels: 8
        0.81            0.04        0.15

Matches are distributed among these distances:
  20    8  0.19
  21    9  0.21
  22    2  0.05
  23   19  0.44
  24    5  0.12

ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39


Consensus pattern (23 bp):   
TATAAATAATTAATATATATAAT
Done.