Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000441.1 Corchorus capsularis cultivar CVL-1 contig00441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9066
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31


Found at i:8939 original size:19 final size:19

Alignment explanation


    Indices: 8926--8963  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       8916 GTTTTTTTTT

                            *  
       8926 AATTATTTGATTTTTTAAA
          1 AATTATTTGATTTTTTTAA

                               
       8945 AATTATTTGATTGTTTTTA
          1 AATTATTTGATT-TTTTTA

       8964 TTTAACCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19   12  0.71
  20    5  0.29

ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61


Consensus pattern (19 bp):   
AATTATTTGATTTTTTTAA
Done.