Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004415.1 Corchorus capsularis cultivar CVL-1 contig04423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1110

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124--167
15
2.9
15
100
0
88
40
6
11
40
1.68
301--364
27
2.2
30
81
10
80
23
12
0
64
1.28
298--354
7
8.1
7
78
5
62
24
12
0
63
1.29
292--363
14
5.1
14
81
10
76
23
11
0
65
1.25
312--369
22
2.6
22
76
13
57
27
10
0
62
1.28
363--410
23
2.1
23
100
0
96
37
0
8
54
1.31
398--426
14
2.1
14
100
0
58
37
0
13
48
1.43
367--419
23
2.2
23
90
6
79
41
0
11
47
1.39
482--518
12
3.1
12
100
0
74
40
0
16
43
1.48
480--538
12
4.6
13
87
10
54
35
1
15
47
1.55
556--632
38
2.0
38
100
0
154
49
20
5
24
1.69

Tables:   1

The End!