Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004446.1 Corchorus capsularis cultivar CVL-1 contig04454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7268
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:4515 original size:4 final size:4

Alignment explanation


    Indices: 4506--4545  Score: 80
    Period size: 4  Copynumber: 10.0  Consensus size: 4

       4496 CAAGTGTCTC

                                                             
       4506 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
          1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT

       4546 GCCTATTTGC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   36  1.00

ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75


Consensus pattern (4 bp):   
TCTT

Found at i:5705 original size:21 final size:21

Alignment explanation


    Indices: 5679--5720  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       5669 ATGGGTGGTA

                                 
       5679 GATCTCGTGGGTTTTGCTTTG
          1 GATCTCGTGGGTTTTGCTTTG

                                 
       5700 GATCTCGTGGGTTTTGCTTTG
          1 GATCTCGTGGGTTTTGCTTTG

       5721 ATTTGTCGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.05, C:0.14, G:0.33, T:0.48


Consensus pattern (21 bp):   
GATCTCGTGGGTTTTGCTTTG
Done.