Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000445.1 Corchorus capsularis cultivar CVL-1 contig00445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1561
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36


Found at i:1230 original size:50 final size:50

Alignment explanation


    Indices: 1122--1273  Score: 214
    Period size: 50  Copynumber: 3.0  Consensus size: 50

       1112 TAAAATGCCC

                    *           *                     *        
       1122 TTTGAAAAGCGAATTTTGATCTTGGACTCACAAAATGGAATGTAATCTTAT
          1 TTTGAAAACCGAATTTTGATATTGGACTCAC-AAATGGAATGCAATCTTAT

            * *     *                           *       *     
       1173 CTCGAAAATCGAATTTTGATATTGGACTCACAAATGAAATGCAACCTTAT
          1 TTTGAAAACCGAATTTTGATATTGGACTCACAAATGGAATGCAATCTTAT

                                        *                     
       1223 TTTGAAAACCGAATTTTGATATTGGACTTACAAATGGAATGCAATCTTAT
          1 TTTGAAAACCGAATTTTGATATTGGACTCACAAATGGAATGCAATCTTAT

             
       1273 T
          1 T

       1274 ATAAAACTTC


Statistics
Matches: 88,  Mismatches: 13, Indels: 1
        0.86            0.13        0.01

Matches are distributed among these distances:
  50   61  0.69
  51   27  0.31

ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34


Consensus pattern (50 bp):   
TTTGAAAACCGAATTTTGATATTGGACTCACAAATGGAATGCAATCTTAT
Done.