Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004459.1 Corchorus capsularis cultivar CVL-1 contig04467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:279 original size:9 final size:10

Alignment explanation


    Indices: 242--274  Score: 66
    Period size: 10  Copynumber: 3.3  Consensus size: 10

        232 CGTTATGAAC

                      
        242 TTTATAATTT
          1 TTTATAATTT

                      
        252 TTTATAATTT
          1 TTTATAATTT

                      
        262 TTTATAATTT
          1 TTTATAATTT

               
        272 TTT
          1 TTT

        275 CAATTCAAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   23  1.00

ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73


Consensus pattern (10 bp):   
TTTATAATTT

Found at i:493 original size:18 final size:18

Alignment explanation


    Indices: 470--507  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        460 CCATTAACGA

                              
        470 ATTTTCAAACGCGGATAC
          1 ATTTTCAAACGCGGATAC

                              
        488 ATTTTCAAACGCGGATAC
          1 ATTTTCAAACGCGGATAC

              
        506 AT
          1 AT

        508 ATGTATCCTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29


Consensus pattern (18 bp):   
ATTTTCAAACGCGGATAC
Done.