Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004466.1 Corchorus capsularis cultivar CVL-1 contig04474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4573
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38


Found at i:3378 original size:21 final size:21

Alignment explanation


    Indices: 3341--3380  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3331 AATACTATAT

                        *        
       3341 TAATATTTTTTATAACCTTTA
          1 TAATATTTTTTACAACCTTTA

                                
       3362 TAAT-TTTTTTAGCAACCTT
          1 TAATATTTTTTA-CAACCTT

       3381 AAAGAAGAAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55


Consensus pattern (21 bp):   
TAATATTTTTTACAACCTTTA

Found at i:4141 original size:2 final size:2

Alignment explanation


    Indices: 4136--4165  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       4126 CATATGTGTG

                                                        
       4136 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       4166 AGAAGTAATG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.