Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004467.1 Corchorus capsularis cultivar CVL-1 contig04475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1010
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30


Found at i:65 original size:29 final size:29

Alignment explanation


    Indices: 1--67  Score: 102
    Period size: 31  Copynumber: 2.3  Consensus size: 29

                                         
          1 CCGAATCA-TTCTCTTGAAGCTCATCCTC
          1 CCGAATCATTTCTCTTGAAGCTCATCCTC

                                           
         29 CCGAAATCATTTCTCCTTGAAGCTCATCCT-
          1 CCG-AATCATTTCT-CTTGAAGCTCATCCTC

                     
         59 CCGAATCAT
          1 CCGAATCAT

         68 AAATGATCCG


Statistics
Matches: 36,  Mismatches: 0, Indels: 5
        0.88            0.00        0.12

Matches are distributed among these distances:
  28    3  0.08
  29   11  0.31
  30    7  0.19
  31   15  0.42

ACGTcount: A:0.24, C:0.34, G:0.10, T:0.31


Consensus pattern (29 bp):   
CCGAATCATTTCTCTTGAAGCTCATCCTC
Done.