Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000447.1 Corchorus capsularis cultivar CVL-1 contig00447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2204
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34


Found at i:2065 original size:30 final size:29

Alignment explanation


    Indices: 1998--2069  Score: 81
    Period size: 29  Copynumber: 2.4  Consensus size: 29

       1988 ACAACGAACC

                                    **** 
       1998 GTCAAATAAGCCCATGAACTATTATTTCA
          1 GTCAAATAAGCCCATGAACTATTAAAAAA

             *                  *         
       2027 GCCAAATAAGCCCATGAACTCTTAAAAAAA
          1 GTCAAATAAGCCCATGAACTATT-AAAAAA

                         
       2057 GTCAAATAAGCCC
          1 GTCAAATAAGCCC

       2070 TGTTGCCAAG


Statistics
Matches: 35,  Mismatches: 7, Indels: 1
        0.81            0.16        0.02

Matches are distributed among these distances:
  29   21  0.60
  30   14  0.40

ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22


Consensus pattern (29 bp):   
GTCAAATAAGCCCATGAACTATTAAAAAA
Done.