Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01004473.1 Corchorus capsularis cultivar CVL-1 contig04481, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 734

Length: 1224
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34


Found at i:331 original size:19 final size:19

Alignment explanation


    Indices: 307--345  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        297 TTATTTATTT

                               
        307 TATATTCGAATTACTTTTA
          1 TATATTCGAATTACTTTTA

                               
        326 TATATTCGAATTACTTTTA
          1 TATATTCGAATTACTTTTA

             
        345 T
          1 T

        346 CGCATTCCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54


Consensus pattern (19 bp):   
TATATTCGAATTACTTTTA

Found at i:754 original size:23 final size:22

Alignment explanation


    Indices: 728--770  Score: 77
    Period size: 23  Copynumber: 1.9  Consensus size: 22

        718 ATAATCCTTT

                                   
        728 ATTTTTTTTTTCAGATTTACTAG
          1 ATTTTTTTTTT-AGATTTACTAG

                                
        751 ATTTTTTTTTTAGATTTACT
          1 ATTTTTTTTTTAGATTTACT

        771 TAGTAATAGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  22    9  0.45
  23   11  0.55

ACGTcount: A:0.21, C:0.07, G:0.07, T:0.65


Consensus pattern (22 bp):   
ATTTTTTTTTTAGATTTACTAG
Done.